Theoretical and Practical HiC Workshop
Team:
- Kasia Oktaba - Instructor
- Hans Nuetzmann - Instructor
- Selene L. Fernandez-Valverde - Instructor
- Francisco Javier Pérez de los Santos - Instructor
- Jesús Emiliano Sotelo Fonseca - Instructor
- América Ramírez Colmenero - Instructor
- José Antonio Corona Gómez - Helper
- Evelia Lorena Coss Navarrete - Helper
- Mariana Tiscareno Andrade - Helper
- Mayra Flores Barraza - Assistant
Schedule
You can consult the schedule here:
Experimental protocol
Link to exp protocol PDF Protocol.
Bioinformatics Syllabus
- Introduction to next generation sequencing techniques and HiC data.
- Quality control of HiC data.
- HiC read alignment
- HiC Matrix construction and correction
- HiC Data formats and visualization
- Compartment Analysis
- Differential interactions